Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs145548072 chr12:112141709 T/TTA 3.21E-8 180 13.33 11.75 2.7 KM Plot
ESCA rs1457441 chr8:2416300 T/C 4.61E-9 180 13.1 16.05 2.93 KM Plot
ESCA rs146921348 chr1:247196832 G/A 6.82E-7 180 13.03 15.57 3.87 KM Plot
ESCA rs147319344 chr11:63413962 AAAAT/A 3.3E-7 178 3.7 18.9 12.93 KM Plot
ESCA rs147397695 chr16:8714136 T/TAAA 4.72E-5 183 3.2 13.1 13.33 KM Plot
ESCA rs148917935 chr1:247184844 ATTTTGTTTTG/A 1.22E-7 180 13.22 17.22 3.87 KM Plot
ESCA rs149134235 chr16:1523010 C/CCTCCCCTA 1.39E-8 183 13.37 13.1 4 KM Plot
ESCA rs149189757 chr5:20947853 CTGT/C 7.08E-7 184 13.35 12.33 2.7 KM Plot
ESCA rs149511688 chr8:41349954 G/GTGCA 1.9E-7 183 13.02 17.27 2.7 KM Plot
ESCA rs149942772 chr3:46012375 CTA/C 0 181 13.33 12.6 0.8 KM Plot
ESCA rs1545877 chr8:2448364 G/C 1.6E-9 180 13.33 14.15 2.93 KM Plot
ESCA rs1558133 chr19:1302965 C/T 9.94E-6 184 4.47 20 12.93 KM Plot
ESCA rs1563593 chr8:2412231 G/C 4.67E-9 181 13.1 15.57 2.93 KM Plot
ESCA rs1569540 chr6:146069112 A/G 9.05E-5 183 10.1 13.4 13.57 KM Plot
ESCA rs1630266 chr6:118612943 G/A 8.05E-6 182 12.93 19.45 2.93 KM Plot